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OSD-346 · GLDS-346

RNAseq analysis of the response of Arabidopsis thaliana phytochrome mutants (PhyA, PhyB) to fractional gravity under blue-light stimulation during spaceflight

Released 2020-11-24

Study overview

What the record says

Traveling to nearby extraterrestrial objects having a reduced gravity level (partial gravity) compared to Earth's gravity is becoming a realistic objective for space agencies. The use of plants as part of life support systems will require a better understanding of the interactions among plant growth responses including tropisms, under partial gravity conditions. Here, we present results from the Seedling Growth space experiments on the ISS, to complement the previously released GLDS-251 dataset including seeds of Arabidopsis thaliana wildtype plants. Seeds were germinated, and seedlings grew for six days under different gravity levels, namely micro-g, several intermediate partial-g levels, and 1g, and were subjected to irradiation with blue light for the last 48 hours. RNA was extracted was obtained for 20 wildtype samples for subsequent RNAseq analysis in GLDS-251, here we add 36 samples from similarly exposed PhyA and PhyB mutants.

Structured metadata

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01

Biological subject

02

Measurement

Measures
transcription profiling
Platform
Illumina

03

Experimental factors

Factor name
Genotype, Spaceflight, Altered Gravity, Treatment

04

Mission context

Mission
SpaceX-2
Space program
NASA, ESA

People & publication

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Publication
RNAseq analysis of the response of Arabidopsis thaliana to fractional gravity under blue-light stimulation during spaceflight RNA-seq analyses of Arabidopsis thaliana seedlings after exposure to blue-light phototropic stimuli in microgravity Changes in operational procedures to improve spaceflight experiments in plant biology in the European Modular Cultivation System A novel blue-light phototropic response is revealed in roots of Arabidopsis thaliana in microgravity
Investigators
Raul Joshua John Javier San-Huei Amanda Marie Yi-Chun Valery Sylvain Samrawit P Z M T V G Herranz Vandenbrink Kiss Medina Lai Polo Saravia-Butler Dinh Chen Boyko Costes Gebre